What’s Changed

• chore: bump dev version by @znorgaard in https://github.com/nf-core/fastquorum/pull/100
• chore: 3.1.1 template update by @znorgaard in https://github.com/nf-core/fastquorum/pull/104
• chore: 3.2.0 template update by @znorgaard in https://github.com/nf-core/fastquorum/pull/108
• chore: Fix language server warnings by @SPPearce in https://github.com/nf-core/fastquorum/pull/109
• fix: Remove temporary fgbio/sortsam as merge bug fixed upstream in samtools by @SPPearce in https://github.com/nf-core/fastquorum/pull/110
• chore: add Zach Norgaard to maintainers, and credit Simon Pearce by @nh13 in https://github.com/nf-core/fastquorum/pull/114
• chore: Try adding nf-test github action by @SPPearce in https://github.com/nf-core/fastquorum/pull/112
• chore: use nextflow format by @znorgaard in https://github.com/nf-core/fastquorum/pull/116
• chore: prepare for release 1.2.0 by @znorgaard in https://github.com/nf-core/fastquorum/pull/117
• fix: download action by @znorgaard in https://github.com/nf-core/fastquorum/pull/119
• chore: release 1.2.0 by @znorgaard in https://github.com/nf-core/fastquorum/pull/118

Full Changelog: https://github.com/nf-core/fastquorum/compare/1.1.0...1.2.0

What’s Changed

• chore: bump dev version by @znorgaard in https://github.com/nf-core/fastquorum/pull/77
• fix: output bai from ALIGN_CONSENSUS_BAM by @znorgaard in https://github.com/nf-core/fastquorum/pull/79
• fix: file glob by @znorgaard in https://github.com/nf-core/fastquorum/pull/80
• chore: template update for nf-core/tools version 3.0.2 by @znorgaard in https://github.com/nf-core/fastquorum/pull/84
• chore: raise minimum version by @znorgaard in https://github.com/nf-core/fastquorum/pull/85
• fix: lower config min version by @znorgaard in https://github.com/nf-core/fastquorum/pull/86
• fix: align versioning across tests and config by @znorgaard in https://github.com/nf-core/fastquorum/pull/87
• chore: prepare for release by @znorgaard in https://github.com/nf-core/fastquorum/pull/88
• fix: allow non-gzipped fastq input by @znorgaard in https://github.com/nf-core/fastquorum/pull/93
• fix: conda environments by @znorgaard in https://github.com/nf-core/fastquorum/pull/90
• fix: limit downloads by @znorgaard in https://github.com/nf-core/fastquorum/pull/95
• chore: set release date by @znorgaard in https://github.com/nf-core/fastquorum/pull/96
• chore: version bump by @znorgaard in https://github.com/nf-core/fastquorum/pull/99
• Update nf-core components to latest versions by @SPPearce in https://github.com/nf-core/fastquorum/pull/98
• chore: release 1.1.0 by @znorgaard in https://github.com/nf-core/fastquorum/pull/89

Full Changelog: https://github.com/nf-core/fastquorum/compare/1.0.1...1.1.0

What’s Changed

• docs: update subway diagrams by @nh13 in https://github.com/nf-core/fastquorum/pull/51
• updates post 1.0.0 release by @nh13 in https://github.com/nf-core/fastquorum/pull/50
• Add when conditions to prepare by @SPPearce in https://github.com/nf-core/fastquorum/pull/58
• Allow escalation of memory for FilterConsensusReads by @SPPearce in https://github.com/nf-core/fastquorum/pull/60
• fix: support when multiple value args can be a number or a comma-delimited string by @nh13 in https://github.com/nf-core/fastquorum/pull/66
• bugfix: merging lanes would result in an error by @nh13 in https://github.com/nf-core/fastquorum/pull/68
• Allow igenomes to work by @SPPearce in https://github.com/nf-core/fastquorum/pull/67
• chore: prepare for 1.0.1 release by @znorgaard in https://github.com/nf-core/fastquorum/pull/69
• Add stubs to all local modules by @SPPearce in https://github.com/nf-core/fastquorum/pull/71
• chore: correct date by @znorgaard in https://github.com/nf-core/fastquorum/pull/75
• chore: release 1.0.1 by @znorgaard in https://github.com/nf-core/fastquorum/pull/70

New Contributors

• @znorgaard made their first contribution in https://github.com/nf-core/fastquorum/pull/69

Full Changelog: https://github.com/nf-core/fastquorum/compare/1.0.0...1.0.1

What’s Changed

• Fix missing code backtick in README by @nh13 in https://github.com/nf-core/fastquorum/pull/5
• rename fgcons to fastquorum by @nh13 in https://github.com/nf-core/fastquorum/pull/6
• [bugfix] fix missing samtools conda requirement by @nh13 in https://github.com/nf-core/fastquorum/pull/7
• Bugfix/make it work local by @nh13 in https://github.com/nf-core/fastquorum/pull/8
• fix bug with strategy != ‘Paired’ by @brentp in https://github.com/nf-core/fastquorum/pull/18
• Add container for docker/singularity by @SPPearce in https://github.com/nf-core/fastquorum/pull/14
• Template update for nf-core/tools version 2.14.1 by @nh13 in https://github.com/nf-core/fastquorum/pull/30
• Fix duplicate line README.md by @nh13 in https://github.com/nf-core/fastquorum/pull/32
• High throughput version of the best practices by @nh13 in https://github.com/nf-core/fastquorum/pull/33
• doc: add fastquorum subway diagram by @nh13 in https://github.com/nf-core/fastquorum/pull/34
• doc: update docs with more explanations by @nh13 in https://github.com/nf-core/fastquorum/pull/36
• add support for samples to have multiple runs or lanes by @nh13 in https://github.com/nf-core/fastquorum/pull/38
• Bump version to 1.0 by @nh13 in https://github.com/nf-core/fastquorum/pull/41
• ci: update snapshots with 1.0.0 release by @nh13 in https://github.com/nf-core/fastquorum/pull/43
• Suggestions by @SPPearce in https://github.com/nf-core/fastquorum/pull/44
• Release 1.0.0 by @nh13 in https://github.com/nf-core/fastquorum/pull/42
• release 1.0.0 post fixes by @nh13 in https://github.com/nf-core/fastquorum/pull/48
• 1.0.0 redux by @nh13 in https://github.com/nf-core/fastquorum/pull/49

New Contributors

• @nh13 made their first contribution in https://github.com/nf-core/fastquorum/pull/5
• @brentp made their first contribution in https://github.com/nf-core/fastquorum/pull/18
• @SPPearce made their first contribution in https://github.com/nf-core/fastquorum/pull/14

Full Changelog: https://github.com/nf-core/fastquorum/commits/1.0.0